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WDR5 in complex with trimethylated H3K4 peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 300 30% PEG4000, 0.2M Ammonium Acetate and 0.1M Na Citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.07 40.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.794 α = 90 b = 98.727 β = 90 c = 80.205 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS V 2006-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 61.55 95.2 23620 23620
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.91 1.97 72.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 61.55 22433 22433 1193 95.22 0.16605 0.16605 0.16401 0.1624 0.2032 0.2021 RANDOM 26.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 2.02 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.572 r_dihedral_angle_3_deg 14.956 r_dihedral_angle_4_deg 13.42 r_dihedral_angle_1_deg 7.522 r_scangle_it 3.572 r_scbond_it 2.439 r_angle_refined_deg 1.53 r_mcangle_it 1.394 r_mcbond_it 0.847 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.572 r_dihedral_angle_3_deg 14.956 r_dihedral_angle_4_deg 13.42 r_dihedral_angle_1_deg 7.522 r_scangle_it 3.572 r_scbond_it 2.439 r_angle_refined_deg 1.53 r_mcangle_it 1.394 r_mcbond_it 0.847 r_nbtor_refined 0.298 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.19 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2395 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction HKL-2000 data scaling MOLREP phasing