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WDR5 in complex with unmodified H3K4 peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 300 20% PEG 3350, 0.2M di-Na Tartrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.23 44.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.951 α = 110.34 b = 61.375 β = 91.22 c = 64.739 γ = 112.66
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V 2006-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 59.76 91.3 44230 44230
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 73.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 59.76 41975 41975 2253 90.82 0.20656 0.20656 0.20393 0.2033 0.25701 0.2525 RANDOM 18.176
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.69 0.35 1.57 0.76 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.996 r_dihedral_angle_4_deg 24.214 r_dihedral_angle_3_deg 14.067 r_dihedral_angle_1_deg 7.079 r_scangle_it 1.587 r_angle_refined_deg 1.164 r_scbond_it 1.032 r_mcangle_it 0.776 r_mcbond_it 0.455 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.996 r_dihedral_angle_4_deg 24.214 r_dihedral_angle_3_deg 14.067 r_dihedral_angle_1_deg 7.079 r_scangle_it 1.587 r_angle_refined_deg 1.164 r_scbond_it 1.032 r_mcangle_it 0.776 r_mcbond_it 0.455 r_nbtor_refined 0.293 r_nbd_refined 0.189 r_symmetry_vdw_refined 0.16 r_symmetry_hbond_refined 0.139 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4799 Nucleic Acid Atoms Solvent Atoms 471 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction DENZO data reduction SCALEPACK data scaling MOLREP phasing