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CRYSTAL STRUCTURE OF a PrpF family methylaconitate isomerase (PA0793) FROM PSEUDOMONAS AERUGINOSA AT 1.95 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 277 1.8M (NH4)2SO4, 0.01M CoCl2, 0.1M MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.18 70.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.69 α = 90 b = 148.69 β = 90 c = 141.085 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 1m long Rh coated bent cylindrical mirror for horizontal and vertical focussing 2006-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.976240 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 47.036 100 0.091 14.54 8.58 57509 35.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.04 100 0.938 2.25 7.36 6723
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 47.02 57491 2918 99.98 0.169 0.168 0.1751 0.196 0.2022 RANDOM 29.583
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.5 -1.5 2.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.867 r_dihedral_angle_4_deg 18.852 r_dihedral_angle_3_deg 13.221 r_dihedral_angle_1_deg 6.398 r_scangle_it 5.683 r_scbond_it 4.31 r_mcangle_it 2.763 r_mcbond_it 2.167 r_angle_refined_deg 1.551 r_angle_other_deg 0.919
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.867 r_dihedral_angle_4_deg 18.852 r_dihedral_angle_3_deg 13.221 r_dihedral_angle_1_deg 6.398 r_scangle_it 5.683 r_scbond_it 4.31 r_mcangle_it 2.763 r_mcbond_it 2.167 r_angle_refined_deg 1.551 r_angle_other_deg 0.919 r_mcbond_other 0.678 r_symmetry_vdw_other 0.302 r_nbd_refined 0.206 r_nbd_other 0.202 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.151 r_symmetry_vdw_refined 0.135 r_nbtor_other 0.091 r_chiral_restr 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2894 Nucleic Acid Atoms Solvent Atoms 371 Heterogen Atoms 35
Software Software Software Name Purpose MolProbity model building REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing