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Bucain, a cardiotoxin from the Malayan Krait Bungarus candidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 293 peg 4000, ammonium acetate, pH 5.6, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.78 55.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.617 α = 90 b = 62.888 β = 90 c = 78.487 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2003-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.51 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 17.2 74.9 7680 7426 2 2.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.16 72.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 17.2 1 7426 7072 354 74.76 0.216 0.20668 0.20378 0.26575 0.2522 RANDOM 33.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 3.18 -2.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.581 r_dihedral_angle_4_deg 27.368 r_dihedral_angle_3_deg 20.989 r_dihedral_angle_1_deg 8.683 r_scangle_it 4.966 r_scbond_it 3.111 r_mcangle_it 2.214 r_angle_refined_deg 2.007 r_mcbond_it 1.268 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.581 r_dihedral_angle_4_deg 27.368 r_dihedral_angle_3_deg 20.989 r_dihedral_angle_1_deg 8.683 r_scangle_it 4.966 r_scbond_it 3.111 r_mcangle_it 2.214 r_angle_refined_deg 2.007 r_mcbond_it 1.268 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.258 r_xyhbond_nbd_refined 0.256 r_nbd_refined 0.246 r_symmetry_hbond_refined 0.209 r_chiral_restr 0.134 r_bond_refined_d 0.021 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1004 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection DENZO data reduction AMoRE phasing