2H80
NMR structures of SAM domain of Deleted in Liver Cancer 2 (DLC2)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 1mM 15N, 13C labelled, 20mM phosphate buffer, pH 7.1, 0.05% NaN3, 4mM DTT; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM phosphate | 7.1 | ambient | 293 | |
2 | 3D_15N-separated_NOESY | 1mM 15N, 13C labelled, 20mM phosphate buffer, pH 7.1, 0.05% NaN3, 4mM DTT; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM phosphate | 7.1 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics, torsion angle dynamics | The structure was based on 1098 NOE-derived distance constraints and 104 angel constraints from Talos | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
---|---|
Details | The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 1 | Frank Delaglio |
2 | data analysis | Sparky | 3.110 | Goddard, T.D., Kneller,D.G. |
3 | structure solution | CYANA | 2.1 | Gntert, P. |
4 | refinement | Amber | 7 | Case, D.A. |