☰ Navigation Tabs
Crystal structure of reduced CprK in absence of any ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H6B pdb entry 2H6B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 8% PEG 3350, 115mM MgCl2, 10mM DTT, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 50.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.637 α = 90 b = 50.03 β = 105.54 c = 76.415 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.9 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 99 0.056 10.6 16387
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.97 99.8 0.257
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2H6B 2.9 29.63 11256 582 98.82 0.2354 0.2354 0.23181 0.2383 0.30723 0.3224 RANDOM 75.205
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 -0.24 -0.26 0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.373 r_dihedral_angle_3_deg 24.274 r_dihedral_angle_4_deg 22.611 r_dihedral_angle_1_deg 10.955 r_scangle_it 2.299 r_angle_refined_deg 2.075 r_scbond_it 1.477 r_angle_other_deg 0.963 r_mcangle_it 0.927 r_mcbond_it 0.547
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.373 r_dihedral_angle_3_deg 24.274 r_dihedral_angle_4_deg 22.611 r_dihedral_angle_1_deg 10.955 r_scangle_it 2.299 r_angle_refined_deg 2.075 r_scbond_it 1.477 r_angle_other_deg 0.963 r_mcangle_it 0.927 r_mcbond_it 0.547 r_nbd_refined 0.264 r_symmetry_vdw_other 0.249 r_symmetry_vdw_refined 0.239 r_nbd_other 0.226 r_xyhbond_nbd_refined 0.224 r_nbtor_refined 0.216 r_symmetry_hbond_refined 0.126 r_nbtor_other 0.108 r_chiral_restr 0.107 r_mcbond_other 0.098 r_xyhbond_nbd_other 0.067 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3281 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction DENZO data reduction SCALEPACK data scaling PHASER phasing