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Crystal Structure of the Human Tyrosine Receptor Phosphatase Gamma
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FH7 pdb entry 2FH7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 Ammonium acetate, citrate, PEG4K, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.42 49.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.849 α = 90 b = 78.859 β = 90 c = 121.758 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97925 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 47.23 100 105096
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2FH7 1.55 47.23 99845 99845 5250 99.96 0.16233 0.1613 0.1681 0.1813 0.1833 RANDOM 16.125
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.22 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.825 r_dihedral_angle_4_deg 14.038 r_dihedral_angle_3_deg 12.418 r_dihedral_angle_1_deg 6.037 r_scangle_it 5.923 r_scbond_it 4.043 r_mcangle_it 3.254 r_mcbond_it 2.111 r_angle_refined_deg 1.411 r_angle_other_deg 1.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.825 r_dihedral_angle_4_deg 14.038 r_dihedral_angle_3_deg 12.418 r_dihedral_angle_1_deg 6.037 r_scangle_it 5.923 r_scbond_it 4.043 r_mcangle_it 3.254 r_mcbond_it 2.111 r_angle_refined_deg 1.411 r_angle_other_deg 1.006 r_mcbond_other 0.731 r_symmetry_vdw_other 0.25 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.216 r_nbd_other 0.199 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.14 r_chiral_restr 0.11 r_nbtor_other 0.084 r_xyhbond_nbd_other 0.022 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4529 Nucleic Acid Atoms Solvent Atoms 559 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling PHASER phasing