X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2FH7pdb entry 2FH7

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.6293Ammonium acetate, citrate, PEG4K, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4249.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.849α = 90
b = 78.859β = 90
c = 121.758γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2006-05-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.97925SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5547.23100105096
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.63100

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2FH71.5547.239984599845525099.960.162330.16130.1813RANDOM16.125
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.5-0.220.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.825
r_dihedral_angle_4_deg14.038
r_dihedral_angle_3_deg12.418
r_dihedral_angle_1_deg6.037
r_scangle_it5.923
r_scbond_it4.043
r_mcangle_it3.254
r_mcbond_it2.111
r_angle_refined_deg1.411
r_angle_other_deg1.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.825
r_dihedral_angle_4_deg14.038
r_dihedral_angle_3_deg12.418
r_dihedral_angle_1_deg6.037
r_scangle_it5.923
r_scbond_it4.043
r_mcangle_it3.254
r_mcbond_it2.111
r_angle_refined_deg1.411
r_angle_other_deg1.006
r_mcbond_other0.731
r_symmetry_vdw_other0.25
r_nbd_refined0.218
r_symmetry_vdw_refined0.216
r_nbd_other0.199
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.165
r_symmetry_hbond_refined0.14
r_chiral_restr0.11
r_nbtor_other0.084
r_xyhbond_nbd_other0.022
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_gen_planes_other0.002
r_bond_other_d0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4529
Nucleic Acid Atoms
Solvent Atoms559
Heterogen Atoms49

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
PHASERphasing