☰ Navigation Tabs
Crystal structure of wildtype MENT in the cleaved conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLE PDB ENTRY 1HLE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 290 15% PEG 8000, 0.1M sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.27 45.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.486 α = 96.89 b = 47.526 β = 93.81 c = 57.794 γ = 116.65
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 1.000 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 85.2 0.04 21.2 40805 40805 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 51 0.159 2435
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HLE 1.7 30 40804 40804 2077 84.78 0.192 0.192 0.191 0.2117 0.214 0.2352 RANDOM 23.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.77 3.09 0.71 1.99 0.12 -2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.247 r_dihedral_angle_4_deg 11.113 r_dihedral_angle_3_deg 10.394 r_dihedral_angle_1_deg 5.354 r_scangle_it 2.182 r_scbond_it 1.5 r_mcangle_it 1.038 r_angle_refined_deg 0.805 r_mcbond_it 0.65 r_angle_other_deg 0.634
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.247 r_dihedral_angle_4_deg 11.113 r_dihedral_angle_3_deg 10.394 r_dihedral_angle_1_deg 5.354 r_scangle_it 2.182 r_scbond_it 1.5 r_mcangle_it 1.038 r_angle_refined_deg 0.805 r_mcbond_it 0.65 r_angle_other_deg 0.634 r_nbtor_refined 0.172 r_nbd_refined 0.171 r_nbd_other 0.153 r_symmetry_vdw_other 0.117 r_symmetry_hbond_refined 0.11 r_mcbond_other 0.095 r_nbtor_other 0.078 r_xyhbond_nbd_refined 0.078 r_chiral_restr 0.05 r_symmetry_vdw_refined 0.042 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3024 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection