☰ Navigation Tabs
Crystal Structure of ERBIN PDZ
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MFG PDB Entry: 1MFG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 292 0.1 M TRIS-HCL, 35% PEG 4000, pH 7.5-8.5, vapor diffusion, temperature 292K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.1 41.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.864 α = 90 b = 44.032 β = 106.18 c = 57.265 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-05-02 M SINGLE WAVELENGTH 2 1 x-ray M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1 30 99.4 0.071 19.5 3.2 100042
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.04 97.6 0.517 1.6 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry: 1MFG 1 30 100218 94642 4711 94.4 0.14872 0.148 0.1584 0.169 0.1789 RANDOM 12.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.04 0.11 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.207 r_dihedral_angle_4_deg 17.297 r_sphericity_free 15.068 r_dihedral_angle_3_deg 9.963 r_sphericity_bonded 6.659 r_dihedral_angle_1_deg 6.32 r_scangle_it 5.998 r_mcangle_it 4.365 r_scbond_it 4.239 r_mcbond_it 3.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.207 r_dihedral_angle_4_deg 17.297 r_sphericity_free 15.068 r_dihedral_angle_3_deg 9.963 r_sphericity_bonded 6.659 r_dihedral_angle_1_deg 6.32 r_scangle_it 5.998 r_mcangle_it 4.365 r_scbond_it 4.239 r_mcbond_it 3.707 r_rigid_bond_restr 2.035 r_angle_refined_deg 1.518 r_mcbond_other 1.357 r_angle_other_deg 0.821 r_nbd_refined 0.228 r_symmetry_vdw_other 0.213 r_nbd_other 0.19 r_nbtor_refined 0.169 r_symmetry_hbond_refined 0.159 r_xyhbond_nbd_refined 0.124 r_chiral_restr 0.097 r_symmetry_vdw_refined 0.093 r_nbtor_other 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1543 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction AMoRE phasing