☰ Navigation Tabs
Structure of the Type III Pantothenate Kinase (CoaX) from Bacillus Anthracis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 protein buffer: 10 mM Na HEPES pH 7.5, 10 mM KCl
protein concentration: 22.5-25.0 mg/mL
reservoir solution: 24-26% ethylene glycol
reservoir volume: 0.5 mL
drop volume: 2 + 2 uL or 4 + 4 uL, protein + reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 3.19 61.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.852 α = 90 b = 133.396 β = 90 c = 41.138 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 210 2006-02-27 M MAD 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 0.9798, 0.9800, 0.9500 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 44.47 100 0.06 16 7 26073 26073 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.33 4.8 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 35.18 26073 24696 1324 99.87 0.217 0.217 0.215 0.2107 0.258 0.2468 RANDOM 40.916
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.267 r_dihedral_angle_4_deg 19.411 r_dihedral_angle_3_deg 14.531 r_dihedral_angle_1_deg 5.836 r_scangle_it 4.621 r_scbond_it 3.089 r_mcangle_it 2.069 r_angle_refined_deg 1.612 r_mcbond_it 1.45 r_symmetry_hbond_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.267 r_dihedral_angle_4_deg 19.411 r_dihedral_angle_3_deg 14.531 r_dihedral_angle_1_deg 5.836 r_scangle_it 4.621 r_scbond_it 3.089 r_mcangle_it 2.069 r_angle_refined_deg 1.612 r_mcbond_it 1.45 r_symmetry_hbond_refined 0.313 r_nbtor_refined 0.312 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.193 r_symmetry_vdw_refined 0.191 r_chiral_restr 0.11 r_bond_refined_d 0.019 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1920 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction CBASS data collection d*TREK data scaling SOLVE phasing