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3.1 A X-ray structure of putative Oligoendopeptidase F: Crystals grown by microfluidic seeding
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 296 PRECIPITATION FROM A HANGING DROP
VAPOR DIFFUSION TRIAL (60% TASCIMATE IN BIS-TRIS PROPANE PH=
7.0) WAS USED TO SEED INTO A 45% TASCIMATE SOLUTION USING A
MICROFLUIDIC MICROBATCH SEEDING TECHNIQUE. CONCENTRATION OF
PROTEIN WAS 17 MG/ML., TEMPERATURE 296K , pH 7.00
Crystal Properties Matthews coefficient Solvent content 3.83 67.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.324 α = 90 b = 119.324 β = 90 c = 248.736 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD ADJUSTABLE FOCUSING MIRRORS. K-B GEOMETRY 2006-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 99.9 0.097 9.28 3.4 37927
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 100 0.392 1.88 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.1 20 31069 35830 1892 99.96 0.18923 0.18735 0.1858 0.22529 0.2232 RANDOM 69.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.43 0.86 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.291 r_dihedral_angle_3_deg 20.015 r_dihedral_angle_4_deg 18.902 r_dihedral_angle_1_deg 5.213 r_scangle_it 1.133 r_angle_refined_deg 1.131 r_scbond_it 0.775 r_mcangle_it 0.439 r_nbtor_refined 0.324 r_mcbond_it 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.291 r_dihedral_angle_3_deg 20.015 r_dihedral_angle_4_deg 18.902 r_dihedral_angle_1_deg 5.213 r_scangle_it 1.133 r_angle_refined_deg 1.131 r_scbond_it 0.775 r_mcangle_it 0.439 r_nbtor_refined 0.324 r_mcbond_it 0.298 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.232 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9337 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing