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Crystal Structure of the PGM domain of the Suppressor of T-Cell receptor (Sts-1)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 13% PEG4000, 0.3 M magnesium acetate, 0.1 M Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.41 49.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.229 α = 90 b = 74.34 β = 101.46 c = 100.106 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 Monochromator 2005-09-17 M MAD 2 1 x-ray 100 CCD ADSC QUANTUM 210 Monochromator 2005-04-04 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 0.967 NSLS X26C 2 SYNCHROTRON NSLS BEAMLINE X26C 1.00 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.82 98.06 96.3 0.057 0.057 26 5.4 72288 72288 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.82 1.86 94.4 0.572 0.572 2.5 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.82 98.06 72282 68629 3653 96.24 0.19808 0.19609 0.2335 0.23599 0.2682 RANDOM 34.165
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.37 2.21 -2.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.656 r_dihedral_angle_4_deg 21.752 r_dihedral_angle_3_deg 15.236 r_dihedral_angle_1_deg 5.671 r_scangle_it 3.027 r_scbond_it 1.988 r_mcangle_it 1.374 r_angle_refined_deg 1.357 r_mcbond_it 0.854 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.656 r_dihedral_angle_4_deg 21.752 r_dihedral_angle_3_deg 15.236 r_dihedral_angle_1_deg 5.671 r_scangle_it 3.027 r_scbond_it 1.988 r_mcangle_it 1.374 r_angle_refined_deg 1.357 r_mcbond_it 0.854 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.232 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6123 Nucleic Acid Atoms Solvent Atoms 303 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data scaling SHARP phasing