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Solution NMR structure of Q8ZP25 from Salmonella typhimurium LT2; Northeast Structural Genomics Consortium Target STR70
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 GFT (4,3)D HNNCABCA NMR Buffer, PH 6.5 95% H20, 5% D20 6.5 ambient 27 2 GFT (4,3)D CABCA(CO)NHN NMR Buffer, PH 6.5 95% H20, 5% D20 6.5 ambient 27 3 GFT (4,3)D HABCAB(CO)NHN NMR Buffer, PH 6.5 95% H20, 5% D20 6.5 ambient 27 4 GFT (4,3)D HCCH NMR Buffer, PH 6.5 95% H20, 5% D20 6.5 ambient 27 5 SIM 13C-, 15N-resolved [1H, 1H] NOESY NMR Buffer, PH 6.5 95% H20, 5% D20 6.5 ambient 27 6 Aromatic 13C-Resolved [1H, 1H] NOESY NMR Buffer, PH 6.5 95% H20, 5% D20 6.5 ambient 27
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750 2 Varian INOVA 600
NMR Refinement Method Details Software constrained simulated annealing
torsion angle dynamics
molecular dynamics
water bath refinement distance constraints from NOEs
angle constraints for clear secondary structure only
stereospecific assignments based on glomsa (HB) and partially labeled sample (QG,QD) CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS 1.1 Brunger, Adams, Clore, DeLano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren. 2 structure solution DYANA 1.5 Guntert 3 structure solution CYANA 1.05 Guntert 4 structure solution CYANA 2.1 Guntert 5 collection VNMR 6.1c Varian 6 processing NMRPipe 2.3 Delaglio, Bax 7 data analysis XEASY 1.3.1.3 Glaser 8 data analysis AutoStructure 2.0.0 Huang, Tejero, Power, Montelione 9 data analysis AutoAssign Zimmerman, Moseley, Kiriyeva, Kulikowski, Montelione