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Crystal structure of the Salmonella SpvB ATR Domain
Crystallization Crystal Properties Matthews coefficient Solvent content 2.83 56.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.585 α = 90 b = 55.585 β = 90 c = 143.577 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2004-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9A 0.979 NSLS X9A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 40 94.3 0.081 15.4 4.4 41183
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.48 1.53 62 0.334 2.2 5136
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 40 41134 2063 97.72 0.158 0.157 0.156 0.2033 0.203 0.2468 RANDOM 21.551
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 0.3 0.6 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.71 r_dihedral_angle_4_deg 18.893 r_dihedral_angle_3_deg 13.119 r_dihedral_angle_1_deg 6.102 r_scangle_it 5.656 r_scbond_it 4.566 r_mcangle_it 2.583 r_mcbond_it 2.236 r_angle_refined_deg 1.69 r_mcbond_other 1.208
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.71 r_dihedral_angle_4_deg 18.893 r_dihedral_angle_3_deg 13.119 r_dihedral_angle_1_deg 6.102 r_scangle_it 5.656 r_scbond_it 4.566 r_mcangle_it 2.583 r_mcbond_it 2.236 r_angle_refined_deg 1.69 r_mcbond_other 1.208 r_angle_other_deg 0.898 r_symmetry_vdw_refined 0.461 r_symmetry_hbond_refined 0.238 r_nbd_refined 0.222 r_nbd_other 0.204 r_nbtor_refined 0.187 r_symmetry_vdw_other 0.181 r_xyhbond_nbd_refined 0.178 r_chiral_restr 0.141 r_nbtor_other 0.089 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1592 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms 10
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction