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Crystal structure of the Salmonella SpvB ATR Domain in complex with NADH
Crystallization Crystal Properties Matthews coefficient Solvent content 2.83 56.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.585 α = 90 b = 55.585 β = 90 c = 143.577 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2003-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9A 0.979 NSLS X9A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.7 0.04 20.6 5.4 21074
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 100 0.367 5.5 2088
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 30 20956 1075 99.61 0.196 0.195 0.194 0.2412 0.235 0.2794 RANDOM 30.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.19 0.38 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.539 r_dihedral_angle_4_deg 19.398 r_dihedral_angle_3_deg 14.336 r_dihedral_angle_1_deg 6.265 r_scangle_it 4.167 r_scbond_it 2.962 r_angle_refined_deg 1.865 r_mcangle_it 1.698 r_mcbond_it 1.466 r_angle_other_deg 0.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.539 r_dihedral_angle_4_deg 19.398 r_dihedral_angle_3_deg 14.336 r_dihedral_angle_1_deg 6.265 r_scangle_it 4.167 r_scbond_it 2.962 r_angle_refined_deg 1.865 r_mcangle_it 1.698 r_mcbond_it 1.466 r_angle_other_deg 0.884 r_symmetry_vdw_refined 0.617 r_mcbond_other 0.348 r_symmetry_hbond_refined 0.345 r_symmetry_vdw_other 0.239 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.213 r_nbd_other 0.192 r_nbtor_refined 0.186 r_chiral_restr 0.11 r_nbtor_other 0.09 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1589 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 44
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction