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Human Sulfotranferase SULT1C2 in complex with PAP and pentachlorophenol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AD1 pdb entry 2AD1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 25% PEG-3350, 0.2M lithium sulfate, 0.1M bis-tris, pH 6.5, vapor diffusion, sitting drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.7 53.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.216 α = 90 b = 135.216 β = 90 c = 158.072 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2006-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 99.9 0.111 7.2 14 67599
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 99.5 10.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT pdb entry 2AD1 1.8 29.025 67580 2203 99.929 0.192 0.1914 0.2093 0.2193 0.2357 thin shells 24.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.425 0.425 -0.851
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.862 r_dihedral_angle_4_deg 18.996 r_dihedral_angle_3_deg 12.563 r_dihedral_angle_1_deg 5.445 r_scangle_it 3.12 r_mcangle_it 2.726 r_scbond_it 2.427 r_mcbond_it 2.082 r_angle_refined_deg 1.301 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.862 r_dihedral_angle_4_deg 18.996 r_dihedral_angle_3_deg 12.563 r_dihedral_angle_1_deg 5.445 r_scangle_it 3.12 r_mcangle_it 2.726 r_scbond_it 2.427 r_mcbond_it 2.082 r_angle_refined_deg 1.301 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.265 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.115 r_symmetry_hbond_refined 0.098 r_chiral_restr 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4703 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 96
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction