☰ Navigation Tabs
Structure of Protein of Unknown Function HP0062 from Helicobacter pylori
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 Na Citrate 1.4M, 0.1M Hepes, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.51 50.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.494 α = 90 b = 43.494 β = 90 c = 97.639 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD SBC-2 2005-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97945 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 94.4 6359 6035 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.155 64.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 29.83 2 6359 6035 294 94.93 0.2278 0.2254 0.22189 0.2357 0.29686 0.3014 RANDOM 69.589
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.02 1.01 2.02 -3.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.087 r_dihedral_angle_3_deg 19.64 r_dihedral_angle_4_deg 18.931 r_dihedral_angle_1_deg 7.601 r_scangle_it 5.032 r_scbond_it 3.162 r_angle_refined_deg 2.035 r_mcangle_it 1.889 r_mcbond_it 1.135 r_symmetry_hbond_refined 0.412
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.087 r_dihedral_angle_3_deg 19.64 r_dihedral_angle_4_deg 18.931 r_dihedral_angle_1_deg 7.601 r_scangle_it 5.032 r_scbond_it 3.162 r_angle_refined_deg 2.035 r_mcangle_it 1.889 r_mcbond_it 1.135 r_symmetry_hbond_refined 0.412 r_symmetry_vdw_refined 0.389 r_xyhbond_nbd_refined 0.327 r_nbtor_refined 0.319 r_nbd_refined 0.245 r_chiral_restr 0.15 r_bond_refined_d 0.025 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 663 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building