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The Human Epha3 Receptor Tyrosine Kinase and Juxtamembrane Region
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 298 20 mg/mL protein, 25% PEG 3350, 0.2M Ammonium Sulfate, 0.1M Hepes, 20% glycerol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 1.84 33.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.163 α = 90 b = 38.274 β = 102.39 c = 76.333 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2006-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 95.8 0.038 48.8 6.8 29945 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 64.5 0.099 21.6 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.77 19.96 29945 28392 1513 99.12 0.15996 0.15805 0.161 0.19455 0.1982 RANDOM 22.652
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -1.24 -0.01 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.043 r_dihedral_angle_4_deg 15.989 r_dihedral_angle_3_deg 12.625 r_scangle_it 5.096 r_dihedral_angle_1_deg 5.089 r_scbond_it 3.487 r_mcangle_it 2.573 r_mcbond_it 1.761 r_angle_refined_deg 1.415 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.043 r_dihedral_angle_4_deg 15.989 r_dihedral_angle_3_deg 12.625 r_scangle_it 5.096 r_dihedral_angle_1_deg 5.089 r_scbond_it 3.487 r_mcangle_it 2.573 r_mcbond_it 1.761 r_angle_refined_deg 1.415 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.246 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.178 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2233 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling SOLVE phasing