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Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.3 293 2M Sodium formate, 0.1M Sodium acetate, pH 5.3, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.76 55.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.409 α = 90 b = 98.409 β = 90 c = 170.582 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 15 99.9 0.07 22.8 14 1342357 1342357
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.47 100 0.66 5.8 14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Difference Fourier THROUGHOUT 1.4 15 91184 91184 4814 99.99 0.17882 0.17882 0.17793 0.1772 0.196 0.1948 RANDOM 18.972
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.15 -0.29 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.185 r_dihedral_angle_4_deg 16.385 r_dihedral_angle_3_deg 11.33 r_dihedral_angle_1_deg 5.329 r_scangle_it 2.871 r_scbond_it 1.893 r_angle_refined_deg 1.352 r_mcangle_it 1.173 r_mcbond_it 0.766 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.185 r_dihedral_angle_4_deg 16.385 r_dihedral_angle_3_deg 11.33 r_dihedral_angle_1_deg 5.329 r_scangle_it 2.871 r_scbond_it 1.893 r_angle_refined_deg 1.352 r_mcangle_it 1.173 r_mcbond_it 0.766 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.226 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.187 r_xyhbond_nbd_refined 0.099 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2971 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement ADSC data collection XDS data scaling XTALVIEW refinement