☰ Navigation Tabs
The crystal structure of B-ketoacyl-ACP synthase II (FabF) from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 1.5 M NaCitrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.34 47.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.397 α = 90 b = 78.397 β = 90 c = 231.269 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 170 CCD MARRESEARCH Si(220) 2006-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.98 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 96.5 0.074 16.4 3.5 35519 2 2 54.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 77 0.284 2.53 2.9 2732
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 29.91 2 34383 32630 1723 96.72 0.224 0.22347 0.22086 0.2188 0.2732 0.2715 RANDOM 54.447
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.05 0.1 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.301 r_dihedral_angle_4_deg 19.588 r_dihedral_angle_3_deg 16.586 r_dihedral_angle_1_deg 4.037 r_scangle_it 1.489 r_mcangle_it 1.08 r_angle_refined_deg 1.031 r_scbond_it 0.898 r_mcbond_it 0.679 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.301 r_dihedral_angle_4_deg 19.588 r_dihedral_angle_3_deg 16.586 r_dihedral_angle_1_deg 4.037 r_scangle_it 1.489 r_mcangle_it 1.08 r_angle_refined_deg 1.031 r_scbond_it 0.898 r_mcbond_it 0.679 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.266 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.07 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6085 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data scaling PHASER phasing