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Crystal structure of putative O-methyltransferase from Bacillus halodurans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 PEGMME 2K, 25mM MgCl2, 10% Glycerol, Tris-Bis, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2 38.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.567 α = 90 b = 62.807 β = 90 c = 137.746 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-11-01 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm 2005-03-20 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.074 NSLS X29A 2 SYNCHROTRON NSLS BEAMLINE X9A 0.98 NSLS X9A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 34.44 99.8 0.044 0.042 33.68 5.3 35229
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.97 99.9 99.9 0.289 0.239 4 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 34.44 35229 35151 1762 99.71 0.208 0.206 0.206 0.2055 0.248 0.2458 RANDOM 43.369
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.92 -1.63 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.85 r_dihedral_angle_4_deg 20.784 r_dihedral_angle_3_deg 16.684 r_dihedral_angle_1_deg 5.464 r_scangle_it 3.893 r_scbond_it 2.976 r_angle_refined_deg 1.493 r_mcangle_it 1.4 r_mcbond_it 1.072 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.85 r_dihedral_angle_4_deg 20.784 r_dihedral_angle_3_deg 16.684 r_dihedral_angle_1_deg 5.464 r_scangle_it 3.893 r_scbond_it 2.976 r_angle_refined_deg 1.493 r_mcangle_it 1.4 r_mcbond_it 1.072 r_nbtor_refined 0.31 r_metal_ion_refined 0.257 r_symmetry_vdw_refined 0.256 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.204 r_xyhbond_nbd_refined 0.179 r_symmetry_metal_ion_refined 0.123 r_chiral_restr 0.115 r_bond_refined_d 0.024 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3071 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 10
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection SHELXD phasing SHELXE model building