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CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 4.6 277 0.02M CaCl2, 30.0% MPD, 0.1M Acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.84 56.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.54 α = 90 b = 100.54 β = 90 c = 67.51 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing) 2006-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 28.76 96.8 0.121 8.13 18135 43.254
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 89.3 0.763 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 28.76 18093 923 99.93 0.179 0.176 0.1829 0.232 0.2318 RANDOM 42.581
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.18 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.657 r_dihedral_angle_4_deg 16.343 r_dihedral_angle_3_deg 14.204 r_scangle_it 8.873 r_scbond_it 7.289 r_dihedral_angle_1_deg 5.84 r_mcangle_it 4.163 r_mcbond_it 3.04 r_angle_refined_deg 1.233 r_mcbond_other 0.813
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.657 r_dihedral_angle_4_deg 16.343 r_dihedral_angle_3_deg 14.204 r_scangle_it 8.873 r_scbond_it 7.289 r_dihedral_angle_1_deg 5.84 r_mcangle_it 4.163 r_mcbond_it 3.04 r_angle_refined_deg 1.233 r_mcbond_other 0.813 r_angle_other_deg 0.624 r_symmetry_vdw_other 0.282 r_nbd_refined 0.221 r_nbd_other 0.217 r_nbtor_refined 0.191 r_symmetry_hbond_refined 0.181 r_symmetry_vdw_refined 0.176 r_xyhbond_nbd_refined 0.148 r_metal_ion_refined 0.127 r_nbtor_other 0.092 r_chiral_restr 0.068 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1910 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction autoSHARP phasing