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Crystal structure of assimilatory adenosine 5'-phosphosulfate reductase with bound APS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 298 1.5M ammonium sulfate, 0.1M sodium cacodylate, 2.5mM APS, pH 6.5, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.35 63.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.027 α = 90.1 b = 102.788 β = 102.57 c = 139.374 γ = 89.95
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 123 IMAGE PLATE MAR scanner 345 mm plate 2005-03-05 M SINGLE WAVELENGTH 2 1 x-ray 123 CCD ADSC QUANTUM 315 2005-03-06 M SINGLE WAVELENGTH 3 1 x-ray 123 CCD MARMOSAIC 325 mm CCD 2005-04-01 M MAD 4 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.98397 SSRL BL9-1 2 SYNCHROTRON SSRL BEAMLINE BL9-2 1.73108 SSRL BL9-2 3 SYNCHROTRON SSRL BEAMLINE BL9-2 1.73710, 1.74203, 1.73710 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.7 38.674 95.6 0.105 0.105 5.9 2 85404 85404
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.77 95.7 0.337 0.337 1.9 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.7 38.68 85402 85402 4181 95.5 0.232 0.232 0.23 0.2219 0.265 0.254 RANDOM 38.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -15.08 6.92 2.38 -6.36 12.69
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.1 c_scangle_it 4.01 c_improper_angle_d 3.18 c_mcangle_it 3.11 c_scbond_it 2.73 c_mcbond_it 1.9 c_angle_deg 1.5 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14404 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 172
Software Software Software Name Purpose SCALA data scaling CNS phasing CNS refinement PDB_EXTRACT data extraction Blu-Ice data collection CCP4 data scaling