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Xray Structure of Gag133-278
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 286 0.2 M BiAmmonium Citrate, 20% PEG 3350, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 286K
Crystal Properties Matthews coefficient Solvent content 2.26 45.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.26 α = 90 b = 134.509 β = 90 c = 42.086 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1999-05-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97895, 0.97858, 0.94002 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 19.8 99.9 48798 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.949 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 19.8 2 46015 2448 99.96 0.20493 0.20493 0.20226 0.2066 0.25713 0.2573 RANDOM 35.954
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 -0.43 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.448 r_dihedral_angle_4_deg 20.478 r_dihedral_angle_3_deg 17.447 r_sphericity_free 10.791 r_dihedral_angle_1_deg 6.534 r_scangle_it 5.793 r_sphericity_bonded 5.623 r_scbond_it 4.095 r_mcangle_it 2.929 r_rigid_bond_restr 2.777
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.448 r_dihedral_angle_4_deg 20.478 r_dihedral_angle_3_deg 17.447 r_sphericity_free 10.791 r_dihedral_angle_1_deg 6.534 r_scangle_it 5.793 r_sphericity_bonded 5.623 r_scbond_it 4.095 r_mcangle_it 2.929 r_rigid_bond_restr 2.777 r_mcbond_it 2.104 r_angle_refined_deg 1.783 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.296 r_nbd_refined 0.246 r_xyhbond_nbd_refined 0.177 r_symmetry_hbond_refined 0.176 r_chiral_restr 0.125 r_bond_refined_d 0.024 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4233 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling SOLVE phasing