☰ Navigation Tabs
PKA threefold mutant model of Rho-kinase with inhibitor H-1152P
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other an unpublished structure of the binary complex of PKA C alpha wildtype enzyme with PKI(5-24)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 278 Methanol, LiCl, MesBisTris, DTT, EDTA, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.55 51.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.02 α = 90 b = 74.746 β = 90 c = 80.184 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 IMAGE PLATE MAR scanner 180 mm plate 2003-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS 1.05
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.598 24.85 100 14022 14022
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT an unpublished structure of the binary complex of PKA C alpha wildtype enzyme with PKI(5-24) 2.6 24.85 12774 12506 671 94.38 0.20298 0.19778 0.2057 0.3026 0.2968 RANDOM 37.837
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.41 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.939 r_scangle_it 2.752 r_scbond_it 1.62 r_angle_refined_deg 1.587 r_mcangle_it 1.171 r_angle_other_deg 0.856 r_mcbond_it 0.641 r_nbd_other 0.227 r_symmetry_vdw_other 0.222 r_nbd_refined 0.208
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.939 r_scangle_it 2.752 r_scbond_it 1.62 r_angle_refined_deg 1.587 r_mcangle_it 1.171 r_angle_other_deg 0.856 r_mcbond_it 0.641 r_nbd_other 0.227 r_symmetry_vdw_other 0.222 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.181 r_symmetry_vdw_refined 0.164 r_symmetry_hbond_refined 0.123 r_nbtor_other 0.087 r_chiral_restr 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2937 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing