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PKA fivefold mutant model of Rho-kinase with inhibitor Fasudil (HA1077)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other an unpublished structure of the binary complex of PKA C alpha wildtype enzyme with PKI(5-24)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 278 Methanol, LiCl, MesBisTris, EDTA, DTT, Mega8, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.56 52.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.227 α = 90 b = 75.959 β = 90 c = 80.396 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARRESEARCH 2004-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 30.88 100 21024 21024
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.27 2.39 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT an unpublished structure of the binary complex of PKA C alpha wildtype enzyme with PKI(5-24) 2.27 30.88 19958 19958 1065 100 0.19222 0.18834 0.26817 0.259 RANDOM 28.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 0.15 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.241 r_scangle_it 3.567 r_scbond_it 2.204 r_angle_refined_deg 1.596 r_mcangle_it 1.47 r_angle_other_deg 0.88 r_mcbond_it 0.79 r_symmetry_vdw_refined 0.415 r_symmetry_vdw_other 0.301 r_symmetry_hbond_refined 0.283
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.241 r_scangle_it 3.567 r_scbond_it 2.204 r_angle_refined_deg 1.596 r_mcangle_it 1.47 r_angle_other_deg 0.88 r_mcbond_it 0.79 r_symmetry_vdw_refined 0.415 r_symmetry_vdw_other 0.301 r_symmetry_hbond_refined 0.283 r_nbd_other 0.24 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.098 r_nbtor_other 0.088 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2978 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing