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Protein kinase A fivefold mutant model of Rho-kinase with Y-27632
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other an unpublished structure of the binary complex of PKA C alpha wildtype enzyme with PKI(5-24)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 278 Methanol, LiCl, MesBisTris, EDTA, DTT, Mega8, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.59 52.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.222 α = 90 b = 76.287 β = 90 c = 80.71 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARRESEARCH 2004-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.161 55.048 100 24519 24519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.16 2.28 91.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT an unpublished structure of the binary complex of PKA C alpha wildtype enzyme with PKI(5-24) 2.28 22.08 19894 19166 1015 96.34 0.20095 0.19813 0.21 0.25831 0.269 RANDOM 37.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.84 1.18 -2.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.044 r_scangle_it 3.779 r_scbond_it 2.285 r_angle_refined_deg 1.638 r_mcangle_it 1.62 r_angle_other_deg 0.89 r_mcbond_it 0.875 r_symmetry_vdw_other 0.276 r_symmetry_hbond_refined 0.27 r_nbd_other 0.236
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.044 r_scangle_it 3.779 r_scbond_it 2.285 r_angle_refined_deg 1.638 r_mcangle_it 1.62 r_angle_other_deg 0.89 r_mcbond_it 0.875 r_symmetry_vdw_other 0.276 r_symmetry_hbond_refined 0.27 r_nbd_other 0.236 r_symmetry_vdw_refined 0.235 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.099 r_nbtor_other 0.089 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2969 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing