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Crystal Structure of D,D-heptose 1.7-bisphosphate phosphatase from E. Coli.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 298 25% PEG 3350, 0.1M Tris, 0.005M DTT, 0.025M sodium chloride, 11% glyceol, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 1.82 32.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.904 α = 90 b = 63.977 β = 90 c = 103.324 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2005-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 1.1 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 40.19 98 0.031 22.7 5.47 54729 54729 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 93.1 0.253 4.4 3.34
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 25 1 51887 51887 2761 100 0.16529 0.16529 0.16274 0.21236 0.2648 RANDOM 23.263
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.93 -0.87 1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.154 r_dihedral_angle_3_deg 12.436 r_dihedral_angle_4_deg 10.697 r_dihedral_angle_1_deg 5.654 r_scangle_it 4.15 r_scbond_it 3.038 r_mcangle_it 1.817 r_angle_refined_deg 1.384 r_mcbond_it 1.345 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.154 r_dihedral_angle_3_deg 12.436 r_dihedral_angle_4_deg 10.697 r_dihedral_angle_1_deg 5.654 r_scangle_it 4.15 r_scbond_it 3.038 r_mcangle_it 1.817 r_angle_refined_deg 1.384 r_mcbond_it 1.345 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.167 r_chiral_restr 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3047 Nucleic Acid Atoms Solvent Atoms 551 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction d*TREK data scaling PHENIX phasing