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Crystal Structure Analysis of bacterial 1,5-AF Reductase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 100mM NaCitrat, 200mM Ammoniumacetat, 30% MPEG 5000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.95 58.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.19 α = 90 b = 84.9 β = 96.3 c = 150.94 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2004-04-20 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2004-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9788 SLS X06SA 2 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.2 19 99.2 0.124 0.124 8.56 3.5 123108 123108 38.236
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.3 0.99 96.4 0.437 0.448 3.6 3.5 15426
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 19 123085 123085 6155 100 0.193 0.193 0.19 0.1889 0.251 0.2456 RANDOM 40.652
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.06 -2.28 2.47 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.406 r_dihedral_angle_4_deg 23.088 r_dihedral_angle_3_deg 21.099 r_dihedral_angle_1_deg 8.01 r_scangle_it 7.942 r_scbond_it 5.979 r_mcangle_it 3.69 r_mcbond_it 2.854 r_angle_refined_deg 1.615 r_nbtor_refined 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.406 r_dihedral_angle_4_deg 23.088 r_dihedral_angle_3_deg 21.099 r_dihedral_angle_1_deg 8.01 r_scangle_it 7.942 r_scbond_it 5.979 r_mcangle_it 3.69 r_mcbond_it 2.854 r_angle_refined_deg 1.615 r_nbtor_refined 0.324 r_nbd_refined 0.269 r_xyhbond_nbd_refined 0.23 r_symmetry_vdw_refined 0.223 r_symmetry_hbond_refined 0.189 r_chiral_restr 0.13 r_bond_refined_d 0.014 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14736 Nucleic Acid Atoms Solvent Atoms 1304 Heterogen Atoms 312
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction ProDC data collection SOLVE phasing