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Crystal structure of the P14'-Ala32 variant of the N-terminally truncated OMTKY3-del(1-5)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M HEPES-Na pH 7.5,
10% v/v isopropanol,
20% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 1.83 32.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.049 α = 90 b = 34.692 β = 97.3 c = 25.795 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2003-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.954 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 40 97.7 11526
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.23 1.27 91.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.23 25.58 10393 1131 97.56 0.13183 0.12971 0.1533 0.15067 0.1687 RANDOM 14.525
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 0.05 0.3 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.849 r_dihedral_angle_3_deg 11.041 r_dihedral_angle_1_deg 6.176 r_scangle_it 3.28 r_scbond_it 2.682 r_mcangle_it 2.502 r_dihedral_angle_4_deg 2.384 r_angle_other_deg 2.358 r_mcbond_it 2.238 r_angle_refined_deg 1.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.849 r_dihedral_angle_3_deg 11.041 r_dihedral_angle_1_deg 6.176 r_scangle_it 3.28 r_scbond_it 2.682 r_mcangle_it 2.502 r_dihedral_angle_4_deg 2.384 r_angle_other_deg 2.358 r_mcbond_it 2.238 r_angle_refined_deg 1.895 r_mcbond_other 0.912 r_nbd_refined 0.174 r_symmetry_vdw_other 0.162 r_nbtor_refined 0.145 r_chiral_restr 0.138 r_nbd_other 0.112 r_xyhbond_nbd_refined 0.076 r_nbtor_other 0.062 r_symmetry_hbond_refined 0.055 r_symmetry_vdw_refined 0.05 r_bond_refined_d 0.021 r_gen_planes_refined 0.018 r_gen_planes_other 0.014 r_bond_other_d 0.011 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 393 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling MOLREP phasing