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Cytoplasmic Protein STM3548 from Salmonella typhimurium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 0.1M Tris, pH 8.5, 1.2M tri-sodium citrate dehydrate, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.41 49.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.892 α = 90 b = 79.367 β = 90 c = 115.66 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2004-06-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979809, 0.979522 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 115.47 93.92 72006 72006
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.34 61.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 115.47 72006 72006 3815 93.92 0.17967 0.17967 0.17717 0.1764 0.22643 0.2257 RANDOM 38.456
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.26 1.15 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.1 r_dihedral_angle_4_deg 21.725 r_dihedral_angle_3_deg 16.912 r_dihedral_angle_1_deg 6.917 r_scangle_it 2.486 r_scbond_it 1.647 r_angle_refined_deg 1.417 r_mcangle_it 1.119 r_mcbond_it 0.679 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.1 r_dihedral_angle_4_deg 21.725 r_dihedral_angle_3_deg 16.912 r_dihedral_angle_1_deg 6.917 r_scangle_it 2.486 r_scbond_it 1.647 r_angle_refined_deg 1.417 r_mcangle_it 1.119 r_mcbond_it 0.679 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.205 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.115 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11736 Nucleic Acid Atoms Solvent Atoms 548 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling autoSHARP phasing SHELXD phasing