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Crystal Structure of a Protein of Unknown Function from Salmonella typhimurium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 295 0.2 M Calcium Chloride dihydrate, 0.25 Sodium Chloride, 0.01 M TRIS-HCL, 20%w/v PEG3350, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.137 α = 90 b = 76.995 β = 109.25 c = 85.112 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2006-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.00882 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 30 94 0.071 16.3 3.4 30366 30366 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.39 2.49 93.8 0.116 9.7 3 3023
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.39 27.9 28845 1520 93.46 0.17194 0.16788 0.1673 0.24883 0.2484 RANDOM 29.096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 -0.09 -0.66 1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.781 r_dihedral_angle_4_deg 15.505 r_dihedral_angle_3_deg 11.527 r_dihedral_angle_1_deg 3.302 r_scangle_it 3.22 r_scbond_it 2.061 r_angle_refined_deg 1.576 r_mcangle_it 1.151 r_mcbond_it 0.728 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.781 r_dihedral_angle_4_deg 15.505 r_dihedral_angle_3_deg 11.527 r_dihedral_angle_1_deg 3.302 r_scangle_it 3.22 r_scbond_it 2.061 r_angle_refined_deg 1.576 r_mcangle_it 1.151 r_mcbond_it 0.728 r_nbtor_refined 0.307 r_symmetry_hbond_refined 0.269 r_xyhbond_nbd_refined 0.192 r_nbd_refined 0.183 r_symmetry_vdw_refined 0.159 r_metal_ion_refined 0.105 r_chiral_restr 0.1 r_symmetry_metal_ion_refined 0.057 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6348 Nucleic Acid Atoms Solvent Atoms 609 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data scaling PHENIX phasing SHARP phasing