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CRYSTAL STRUCTURE OF A PILZ-CONTAINING PROTEIN (PP4397) FROM PSEUDOMONAS PUTIDA KT2440 AT 2.25 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 277 35.0% 2-propanol, 5.0% PEG-1000, 0.1M Citrate pH 5.5 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.11 41.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.224 α = 90 b = 48.819 β = 93.41 c = 57.476 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, double crystal monochromator, toroid focusing mirror 2006-02-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97941, 0.97879, 0.91162 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 28.69 99.4 0.061 0.061 8.8 3 11812 33.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.31 94.7 0.3 0.3 1.2 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 28.69 11212 564 98.99 0.21 0.20976 0.206 0.2133 0.275 0.2747 RANDOM 27.772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.85 0.52 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.9 r_dihedral_angle_4_deg 20.654 r_dihedral_angle_3_deg 15.254 r_dihedral_angle_1_deg 5.905 r_scangle_it 2.447 r_scbond_it 1.58 r_angle_refined_deg 1.501 r_mcangle_it 1.051 r_angle_other_deg 0.823 r_mcbond_it 0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.9 r_dihedral_angle_4_deg 20.654 r_dihedral_angle_3_deg 15.254 r_dihedral_angle_1_deg 5.905 r_scangle_it 2.447 r_scbond_it 1.58 r_angle_refined_deg 1.501 r_mcangle_it 1.051 r_angle_other_deg 0.823 r_mcbond_it 0.71 r_symmetry_vdw_other 0.254 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.178 r_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.176 r_nbd_other 0.175 r_mcbond_other 0.129 r_chiral_restr 0.087 r_nbtor_other 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1948 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing