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Crystal structure of homoserine o-succinyltransferase (NP_981826.1) from Bacillus cereus ATCC 10987 at 2.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 8 277 1.6M (NH4)2SO4, 0.1M TRIS pH 8.0 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.44 54.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.89 α = 90 b = 95.89 β = 90 c = 75.403 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 1m long Rh coated bent cylindrical mirror for horizontal and vertical focussing 2006-02-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.918381, 0.979094,0.978532 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.64 99.8 0.124 0.124 4.6 6.6 14274 38.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 100 0.592 0.592 1.3 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 30 13291 699 97.97 0.191 0.19144 0.188 0.1947 0.25 0.246 RANDOM 22.813
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.14 r_dihedral_angle_4_deg 14.566 r_dihedral_angle_3_deg 13.183 r_scangle_it 6.421 r_dihedral_angle_1_deg 5.377 r_scbond_it 4.574 r_mcangle_it 2.593 r_mcbond_it 1.632 r_angle_refined_deg 0.742 r_angle_other_deg 0.513
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.14 r_dihedral_angle_4_deg 14.566 r_dihedral_angle_3_deg 13.183 r_scangle_it 6.421 r_dihedral_angle_1_deg 5.377 r_scbond_it 4.574 r_mcangle_it 2.593 r_mcbond_it 1.632 r_angle_refined_deg 0.742 r_angle_other_deg 0.513 r_mcbond_other 0.358 r_symmetry_vdw_other 0.252 r_nbd_refined 0.204 r_nbd_other 0.195 r_symmetry_hbond_refined 0.193 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.151 r_symmetry_vdw_refined 0.136 r_nbtor_other 0.086 r_chiral_restr 0.049 r_bond_refined_d 0.014 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2210 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHARP phasing