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Conformational mobility in the active site of a heme peroxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 273 0.1 M HEPES, pH 8.3, 2.25 M Lithium Sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.23 44.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.909 α = 90 b = 81.909 β = 90 c = 75.14 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0000 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 45.88 98.6 0.107 12.8 4.3 71053
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.32 99.9 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.25 36.64 66211 66211 3534 98.16 0.18965 0.1887 0.1848 0.20721 0.2055 RANDOM 12.678
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.387 r_dihedral_angle_4_deg 18.952 r_dihedral_angle_3_deg 12.018 r_dihedral_angle_1_deg 4.837 r_scangle_it 2.6 r_sphericity_bonded 2.195 r_sphericity_free 2.052 r_scbond_it 1.658 r_mcangle_it 1.192 r_angle_refined_deg 1.049
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.387 r_dihedral_angle_4_deg 18.952 r_dihedral_angle_3_deg 12.018 r_dihedral_angle_1_deg 4.837 r_scangle_it 2.6 r_sphericity_bonded 2.195 r_sphericity_free 2.052 r_scbond_it 1.658 r_mcangle_it 1.192 r_angle_refined_deg 1.049 r_rigid_bond_restr 0.844 r_mcbond_it 0.678 r_xyhbond_nbd_refined 0.383 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.257 r_metal_ion_refined 0.211 r_nbd_refined 0.197 r_symmetry_hbond_refined 0.156 r_chiral_restr 0.072 r_bond_refined_d 0.006 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1896 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms 46
Software Software Software Name Purpose ADSC data collection MOSFLM data reduction REFMAC refinement