2GGN

Conformational mobility in the active site of a heme peroxidase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.32732.4 M lithium sulphate, 0.1 M HEPES pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 273K
Crystal Properties
Matthews coefficientSolvent content
2.2344.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.672α = 90
b = 81.672β = 90
c = 75.508γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42005-11-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9998ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3528.8899.90.09717.810.75619316.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.351.4299.94

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.3526.255328653286285499.250.190420.190420.189670.20466RANDOM16.459
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.829
r_dihedral_angle_4_deg20.372
r_dihedral_angle_3_deg10.697
r_dihedral_angle_1_deg4.929
r_scangle_it2.718
r_sphericity_free2.481
r_sphericity_bonded2.296
r_scbond_it1.762
r_mcangle_it1.218
r_angle_refined_deg1.086
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.829
r_dihedral_angle_4_deg20.372
r_dihedral_angle_3_deg10.697
r_dihedral_angle_1_deg4.929
r_scangle_it2.718
r_sphericity_free2.481
r_sphericity_bonded2.296
r_scbond_it1.762
r_mcangle_it1.218
r_angle_refined_deg1.086
r_rigid_bond_restr0.991
r_mcbond_it0.705
r_nbtor_refined0.307
r_symmetry_vdw_refined0.235
r_nbd_refined0.201
r_xyhbond_nbd_refined0.106
r_symmetry_hbond_refined0.1
r_chiral_restr0.074
r_bond_refined_d0.007
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1890
Nucleic Acid Atoms
Solvent Atoms265
Heterogen Atoms54

Software

Software
Software NamePurpose
ADSCdata collection
MOSFLMdata reduction
REFMACrefinement