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Conformational mobility in the active site of a heme peroxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 273 2.4 M lithium sulphate, 0.1 M HEPES pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.23 44.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.672 α = 90 b = 81.672 β = 90 c = 75.508 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9998 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 28.88 99.9 0.097 17.8 10.7 56193 16.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.42 99.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.35 26.25 53286 53286 2854 99.25 0.19042 0.19042 0.18967 0.1845 0.20466 0.198 RANDOM 16.459
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.829 r_dihedral_angle_4_deg 20.372 r_dihedral_angle_3_deg 10.697 r_dihedral_angle_1_deg 4.929 r_scangle_it 2.718 r_sphericity_free 2.481 r_sphericity_bonded 2.296 r_scbond_it 1.762 r_mcangle_it 1.218 r_angle_refined_deg 1.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.829 r_dihedral_angle_4_deg 20.372 r_dihedral_angle_3_deg 10.697 r_dihedral_angle_1_deg 4.929 r_scangle_it 2.718 r_sphericity_free 2.481 r_sphericity_bonded 2.296 r_scbond_it 1.762 r_mcangle_it 1.218 r_angle_refined_deg 1.086 r_rigid_bond_restr 0.991 r_mcbond_it 0.705 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.235 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.106 r_symmetry_hbond_refined 0.1 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1890 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 54
Software Software Software Name Purpose ADSC data collection MOSFLM data reduction REFMAC refinement