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The mutant A222C of Agrobacterium radiobacter N-carbamoyl-D-amino acid amidohydrolase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FO6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 lithium sulfate, HEPES buffer, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.37 48.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.379 α = 90 b = 68.101 β = 96.09 c = 138.191 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IV 2003-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 94.8 50489
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 93.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FO6 2.4 30 45394 2398 94.75 0.169 0.16975 0.16773 0.1691 0.20832 0.1945 RANDOM 32.097
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.53 -0.06 -0.67 -2.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.959 r_dihedral_angle_4_deg 19.381 r_dihedral_angle_3_deg 16.1 r_dihedral_angle_1_deg 6.784 r_angle_refined_deg 1.381 r_symmetry_hbond_refined 0.338 r_nbtor_refined 0.324 r_symmetry_vdw_refined 0.243 r_nbd_refined 0.237 r_xyhbond_nbd_refined 0.228
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.959 r_dihedral_angle_4_deg 19.381 r_dihedral_angle_3_deg 16.1 r_dihedral_angle_1_deg 6.784 r_angle_refined_deg 1.381 r_symmetry_hbond_refined 0.338 r_nbtor_refined 0.324 r_symmetry_vdw_refined 0.243 r_nbd_refined 0.237 r_xyhbond_nbd_refined 0.228 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9568 Nucleic Acid Atoms Solvent Atoms 402 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing