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cAMP-dependent protein kinase PKA catalytic subunit with PKI-5-24
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other AN UNPUBLISHED STRUCTURE OF THE BINARY COMPLEX OF BOVINE PKA C ALPHA ENZYME WITH PKI(5-24)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 15 % Methanol, 75 mM LiCl, 30 mM MesBisTris, 1 mM DTT, 0.2 mM EDTA, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.56 51.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.492 α = 90 b = 75.533 β = 90 c = 80.387 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARRESEARCH 2004-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.00076 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.642 55.048 99.77 54383 54188 514.1 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT AN UNPUBLISHED STRUCTURE OF THE BINARY COMPLEX OF BOVINE PKA C ALPHA ENZYME WITH PKI(5-24) 1.87 55.05 3 54326 35182 1888 99.77 0.23908 0.19435 0.19196 0.2021 0.23908 0.2457 RANDOM 25.139
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.43 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.92 r_scangle_it 4.416 r_scbond_it 2.758 r_mcangle_it 1.754 r_angle_refined_deg 1.566 r_mcbond_it 0.952 r_angle_other_deg 0.9 r_symmetry_vdw_refined 0.478 r_symmetry_vdw_other 0.391 r_nbd_other 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.92 r_scangle_it 4.416 r_scbond_it 2.758 r_mcangle_it 1.754 r_angle_refined_deg 1.566 r_mcbond_it 0.952 r_angle_other_deg 0.9 r_symmetry_vdw_refined 0.478 r_symmetry_vdw_other 0.391 r_nbd_other 0.243 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.165 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.12 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2943 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement