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Crystal structure of SnoaL2 a putative hydroxylase from Streptomyces nogalater
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 18-20% PEG 8000, 0.2M magnesium sulphate, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.89 68.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.008 α = 90 b = 90.008 β = 90 c = 116.707 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2004-07-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.9790, 0.9788, 0.9823 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 40 98 0.082 26.1 13 18909 64.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 87.8 0.605 2.4 7.5 2417
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 38.9 18058 18058 964 98.02 0.21942 0.21942 0.21794 0.2171 0.24892 0.2442 RANDOM 50.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.14 0.29 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.69 r_dihedral_angle_4_deg 18.786 r_dihedral_angle_3_deg 18.694 r_dihedral_angle_1_deg 6.218 r_scangle_it 3.32 r_scbond_it 2.12 r_angle_refined_deg 1.448 r_mcangle_it 1.262 r_mcbond_it 0.993 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.69 r_dihedral_angle_4_deg 18.786 r_dihedral_angle_3_deg 18.694 r_dihedral_angle_1_deg 6.218 r_scangle_it 3.32 r_scbond_it 2.12 r_angle_refined_deg 1.448 r_mcangle_it 1.262 r_mcbond_it 0.993 r_nbtor_refined 0.307 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.197 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.088 r_symmetry_vdw_refined 0.067 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2212 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing