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C6A/C111A/C57A/C146A holo CuZn Superoxide dismutase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N18
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 2.8M Ammonium Sulphate, 50mM NaAc, 0.1M TRIS-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.86 68.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.8 α = 90 b = 202.37 β = 90 c = 143.64 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.080 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 99.9 0.064 162729 162729 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 0.239 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1N18 2 19.88 162729 162695 8162 99.99 0.184 0.184 0.183 0.207 0.2554 RANDOM 26.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 -0.3 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.487 r_dihedral_angle_3_deg 11.075 r_dihedral_angle_4_deg 9.137 r_dihedral_angle_1_deg 5.9 r_scangle_it 1.501 r_scbond_it 1.108 r_angle_refined_deg 1.055 r_angle_other_deg 0.669 r_mcangle_it 0.577 r_mcbond_it 0.519
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.487 r_dihedral_angle_3_deg 11.075 r_dihedral_angle_4_deg 9.137 r_dihedral_angle_1_deg 5.9 r_scangle_it 1.501 r_scbond_it 1.108 r_angle_refined_deg 1.055 r_angle_other_deg 0.669 r_mcangle_it 0.577 r_mcbond_it 0.519 r_symmetry_vdw_other 0.195 r_nbd_refined 0.183 r_nbd_other 0.173 r_nbtor_refined 0.158 r_symmetry_vdw_refined 0.111 r_symmetry_hbond_refined 0.11 r_xyhbond_nbd_refined 0.106 r_metal_ion_refined 0.092 r_nbtor_other 0.079 r_mcbond_other 0.074 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11060 Nucleic Acid Atoms Solvent Atoms 1498 Heterogen Atoms 20
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction CCP4 data scaling CNS phasing