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C6A/C111A/C57A/C146A apo CuZn Superoxide dismutase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HL4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 25% PEG4000, 0.1M Na Cacodylate, 50mM NaAc, 1mM EDTA, 1mM NaN3, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.27 45.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.614 α = 90 b = 34.427 β = 112.17 c = 114.461 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.092 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 99.6 0.072 38835 38835 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99 0.212 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1HL4 2 20 38835 38832 1953 99.61 0.219 0.219 0.217 0.2298 0.257 0.2681 RANDOM 36.981
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.87 -1.79 6.28 -3.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.654 r_dihedral_angle_3_deg 11.962 r_dihedral_angle_4_deg 11.012 r_dihedral_angle_1_deg 6.05 r_scangle_it 1.345 r_angle_refined_deg 1.061 r_scbond_it 0.961 r_angle_other_deg 0.66 r_mcangle_it 0.585 r_mcbond_it 0.499
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.654 r_dihedral_angle_3_deg 11.962 r_dihedral_angle_4_deg 11.012 r_dihedral_angle_1_deg 6.05 r_scangle_it 1.345 r_angle_refined_deg 1.061 r_scbond_it 0.961 r_angle_other_deg 0.66 r_mcangle_it 0.585 r_mcbond_it 0.499 r_symmetry_vdw_other 0.193 r_nbd_refined 0.173 r_nbd_other 0.173 r_nbtor_refined 0.159 r_xyhbond_nbd_refined 0.125 r_symmetry_hbond_refined 0.113 r_nbtor_other 0.079 r_mcbond_other 0.068 r_symmetry_vdw_refined 0.063 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4002 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling CNS phasing