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C6A/C111A CuZn Superoxide dismutase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HL4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 18% PEG8000, 50mM TRIS-HCL, 50mM NaAc, 1mM EDTA, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.33 47.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.618 α = 90 b = 35.257 β = 112.17 c = 114.971 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.092 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 99.4 0.059 64389 64389 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 99.9 0.378 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1HL4 1.7 20 64389 64189 3249 98.94 0.204 0.204 0.203 0.2139 0.23 0.2398 RANDOM 31.885
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.5 -0.73 2.16 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.789 r_dihedral_angle_3_deg 10.404 r_dihedral_angle_4_deg 10.324 r_dihedral_angle_1_deg 5.687 r_scangle_it 1.604 r_scbond_it 1.201 r_angle_refined_deg 1.031 r_mcangle_it 0.677 r_angle_other_deg 0.673 r_mcbond_it 0.569
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.789 r_dihedral_angle_3_deg 10.404 r_dihedral_angle_4_deg 10.324 r_dihedral_angle_1_deg 5.687 r_scangle_it 1.604 r_scbond_it 1.201 r_angle_refined_deg 1.031 r_mcangle_it 0.677 r_angle_other_deg 0.673 r_mcbond_it 0.569 r_symmetry_vdw_other 0.182 r_nbd_refined 0.181 r_metal_ion_refined 0.174 r_nbd_other 0.171 r_nbtor_refined 0.156 r_xyhbond_nbd_refined 0.113 r_symmetry_hbond_refined 0.104 r_mcbond_other 0.09 r_symmetry_vdw_refined 0.08 r_nbtor_other 0.079 r_chiral_restr 0.062 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4026 Nucleic Acid Atoms Solvent Atoms 537 Heterogen Atoms 4
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling CNS phasing