☰ Navigation Tabs
Metal-depleted Ecl18kI in complex with uncleaved, modified DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.1 294 0.4M (NH4)H2PO4, pH 4.1, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.32 47.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.697 α = 90 b = 96.739 β = 90 c = 192.012 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Double focusing X-ray optics 2002-11-06 M MAD 2 1 x-ray 100 CCD MARRESEARCH 2005-09-18 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05, 0.900, 0.9198, 0.9200 MPG/DESY, HAMBURG BW6 2 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 0.9792, 0.9795 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 40 97.7 0.043 0.043 31 3.3 158490 158490 31
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.7 1.72 92.6 0.34 0.34 3.9 3 5907
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 20 157798 157798 7898 97.5 0.208 0.208 0.207 0.2059 0.236 0.234 RANDOM 20.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.98 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.589 r_dihedral_angle_4_deg 17.786 r_dihedral_angle_3_deg 15.312 r_dihedral_angle_1_deg 5.09 r_scangle_it 3.4 r_scbond_it 2.591 r_angle_refined_deg 1.475 r_mcangle_it 1.463 r_mcbond_it 1.18 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.589 r_dihedral_angle_4_deg 17.786 r_dihedral_angle_3_deg 15.312 r_dihedral_angle_1_deg 5.09 r_scangle_it 3.4 r_scbond_it 2.591 r_angle_refined_deg 1.475 r_mcangle_it 1.463 r_mcbond_it 1.18 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.288 r_symmetry_hbond_refined 0.241 r_nbd_refined 0.222 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.095 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9695 Nucleic Acid Atoms 726 Solvent Atoms 602 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing SHELXE model building MLPHARE phasing GETAX phasing DM phasing