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Crystal structure of a duf433 member protein (ava_0674) from anabaena variabilis atcc 29413 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 6.5 277 20.0% Glycerol, 0.16M Mg(oAc)2, 16.0% PEG-8000, 0.1M Cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.8 50.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.98 α = 90 b = 65.12 β = 90 c = 86.86 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing 2006-02-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.918381, 0.978489, 0.979094 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.64 99.1 0.056 8.86 3.549 18535 32.644
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 97.3 0.342 2.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 28.64 18491 958 99.32 0.178 0.176 0.218 0.2614 RANDOM 29.739
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.03 -0.7 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.498 r_dihedral_angle_4_deg 16.942 r_dihedral_angle_3_deg 12.846 r_scangle_it 6.748 r_scbond_it 5.097 r_dihedral_angle_1_deg 4.889 r_mcangle_it 2.995 r_mcbond_it 2.256 r_angle_refined_deg 1.485 r_angle_other_deg 0.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.498 r_dihedral_angle_4_deg 16.942 r_dihedral_angle_3_deg 12.846 r_scangle_it 6.748 r_scbond_it 5.097 r_dihedral_angle_1_deg 4.889 r_mcangle_it 2.995 r_mcbond_it 2.256 r_angle_refined_deg 1.485 r_angle_other_deg 0.852 r_mcbond_other 0.533 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.207 r_symmetry_vdw_other 0.191 r_symmetry_hbond_refined 0.19 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.175 r_nbd_other 0.168 r_chiral_restr 0.086 r_nbtor_other 0.085 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1588 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SOLVE phasing