☰ Navigation Tabs
Structure of Human Complement Factor H Carboxyl Terminal Domains 19-20: a Basis for Atypical Hemolytic Uremic Syndrome
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 Before crystallization the protein was concentrated to 10 mg/ml and dialysed into 20 mM Tris, 50 mM NaCl, pH 7.0. The protein was crystallized in sitting drops by mixing 1 ul of protein solution at 10 mg/ml with 1 ul of reservoir solution of 2.2 M (NH4)2SO4, 0.1 M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 4.05 69.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.41 α = 90 b = 91.41 β = 90 c = 110.88 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-10-14 M SINGLE WAVELENGTH 2 1 100 IMAGE PLATE RIGAKU RAXIS IV 2003-10-20
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1 2 ROTATING ANODE RIGAKU RU300 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 14.78 99.93 0.059 6.9 22700 22700
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.795 99.9 0.441 3.7 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 14.78 22700 22700 1239 99.93 0.20735 0.20735 0.20641 0.2145 0.22479 0.2267 RANDOM 23.593
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.06 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.646 r_dihedral_angle_3_deg 11.179 r_dihedral_angle_4_deg 10.057 r_dihedral_angle_1_deg 6.6 r_scangle_it 4.865 r_scbond_it 3.508 r_mcangle_it 2.08 r_angle_refined_deg 1.645 r_mcbond_it 1.453 r_angle_other_deg 0.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.646 r_dihedral_angle_3_deg 11.179 r_dihedral_angle_4_deg 10.057 r_dihedral_angle_1_deg 6.6 r_scangle_it 4.865 r_scbond_it 3.508 r_mcangle_it 2.08 r_angle_refined_deg 1.645 r_mcbond_it 1.453 r_angle_other_deg 0.895 r_symmetry_vdw_other 0.322 r_symmetry_hbond_refined 0.32 r_mcbond_other 0.319 r_symmetry_vdw_refined 0.254 r_nbd_refined 0.213 r_nbd_other 0.181 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.118 r_nbtor_other 0.085 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 976 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXS phasing