2G7H
Structure of an O6-Methylguanine DNA Methyltransferase from Methanococcus jannaschii (MJ1529)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.8 mM Mj1529, U-15N | 95% H2O/5% D2O | 50 mM sodium phosphate, 500 mM NaCl | 6.2 | ambient | 303 | |
2 | HNHA | 0.8 mM Mj1529, U-15N | 95% H2O/5% D2O | 50 mM sodium phosphate, 500 mM NaCl | 6.2 | ambient | 303 | |
3 | 4D_13C Separated NOESY | 0.8 mM MJ1529, U-15N, U-13C | 95% H2O/5% D2O | 50 mM sodium phosphate, 500 mM NaCl | 6.2 | ambient | 303 | |
4 | 4D_13C/15N Separated NOESY | 0.8 mM MJ1529, U-15N, U-13C | 95% H2O/5% D2O | 50 mM sodium phosphate, 500 mM NaCl | 6.2 | ambient | 303 | |
5 | D20 Exchange | 0.8 mM MJ1529 | 100% D2O | 50 mM sodium phosphate, 500 mM NaCl | 6.2 | ambient | 303 | |
6 | 3d_13C Separated NOESY | 0.8 mM MJ1529, U-13C | 94% H20, 5% D2O | 50 mM sodium phosphate, 500 mM NaCl | 6.2 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 600 |
2 | Bruker | DRX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics in torsion space | 150 structures calculated, lowest energy refined with residual dipolar couplings (50 total calculated, taking 10 lowest energy) | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 150 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 1.1 | Brunger |
2 | processing | NMRPipe | 1 | Bax |
3 | data analysis | NMRView | 5.0.4 | Johnson |
4 | refinement | CNS | 1.1 | Brunger |