☰ Navigation Tabs
Suicide inhibition of a-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-oxonanoate Synthase with trifluoroalanine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 298 0.2M AMMONIUM SULPHATE, 200MM BIS-TRIS, pH 7.0, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.38 48.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.67 α = 90 b = 58.67 β = 90 c = 198.97 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.9076 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 45 99.9 0.106 8.4 32000 22100
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 99
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.14 21.41 20559 20556 689 96.17 0.17856 0.17627 0.1817 0.24642 0.2473 RANDOM 37.671
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -0.16 -0.31 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.52 r_dihedral_angle_4_deg 21.475 r_dihedral_angle_3_deg 19.364 r_dihedral_angle_1_deg 6.338 r_scangle_it 3.039 r_mcangle_it 2.877 r_scbond_it 2.131 r_angle_refined_deg 2.011 r_mcbond_it 1.943 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.52 r_dihedral_angle_4_deg 21.475 r_dihedral_angle_3_deg 19.364 r_dihedral_angle_1_deg 6.338 r_scangle_it 3.039 r_mcangle_it 2.877 r_scbond_it 2.131 r_angle_refined_deg 2.011 r_mcbond_it 1.943 r_nbtor_refined 0.322 r_nbd_refined 0.26 r_symmetry_vdw_refined 0.216 r_xyhbond_nbd_refined 0.213 r_symmetry_hbond_refined 0.178 r_chiral_restr 0.155 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2919 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 20
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction AMoRE phasing