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Crystal structure of human PTPA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.15 42.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.19 α = 90 b = 76.42 β = 90 c = 87.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD LN2 cooled fixed-exit, Si(111) monochromator 2006-02-11 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 225 mm CCD LN2 cooled fixed-exit, Si(111) monochromator 2006-02-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA 2 SYNCHROTRON SLS BEAMLINE X06SA 0.97993, 0.97973, 0.91166 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 20 99.8 0.084 22.5 13.7 43314 43241
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.6 1.7 99.7 0.429 7.4 13.7 7071
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 19.9 43314 41045 2194 99.91 0.15361 0.15361 0.15201 0.1617 0.18339 0.1913 RANDOM 10.504
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.263 r_dihedral_angle_4_deg 24.082 r_dihedral_angle_3_deg 11.995 r_dihedral_angle_1_deg 5.532 r_scangle_it 4.012 r_scbond_it 3.059 r_mcangle_it 1.639 r_angle_refined_deg 1.587 r_mcbond_it 1.44 r_angle_other_deg 1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.263 r_dihedral_angle_4_deg 24.082 r_dihedral_angle_3_deg 11.995 r_dihedral_angle_1_deg 5.532 r_scangle_it 4.012 r_scbond_it 3.059 r_mcangle_it 1.639 r_angle_refined_deg 1.587 r_mcbond_it 1.44 r_angle_other_deg 1.02 r_mcbond_other 0.311 r_symmetry_vdw_other 0.287 r_symmetry_hbond_refined 0.252 r_nbd_refined 0.25 r_xyhbond_nbd_refined 0.212 r_nbd_other 0.197 r_nbtor_refined 0.191 r_symmetry_vdw_refined 0.141 r_chiral_restr 0.098 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2459 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SOLVE phasing