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structure of thaumatin at 2.0 A wavelength
Crystallization Crystal Properties Matthews coefficient Solvent content 2.83 56.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.9 α = 90 b = 57.9 β = 90 c = 150.39 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 2.00 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 30 18622
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.98 30 18237 385 99.95 0.19493 0.1939 0.2042 0.24311 RANDOM 30.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 0.5 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.832 r_dihedral_angle_4_deg 15.191 r_dihedral_angle_3_deg 14.557 r_dihedral_angle_1_deg 7.53 r_scangle_it 6.597 r_scbond_it 5.024 r_mcangle_it 2.12 r_angle_refined_deg 1.967 r_mcbond_it 1.673 r_angle_other_deg 0.958
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.832 r_dihedral_angle_4_deg 15.191 r_dihedral_angle_3_deg 14.557 r_dihedral_angle_1_deg 7.53 r_scangle_it 6.597 r_scbond_it 5.024 r_mcangle_it 2.12 r_angle_refined_deg 1.967 r_mcbond_it 1.673 r_angle_other_deg 0.958 r_symmetry_hbond_refined 0.426 r_mcbond_other 0.362 r_symmetry_vdw_other 0.292 r_symmetry_vdw_refined 0.279 r_nbd_refined 0.203 r_nbd_other 0.189 r_nbtor_refined 0.185 r_chiral_restr 0.134 r_xyhbond_nbd_refined 0.105 r_nbtor_other 0.092 r_bond_refined_d 0.026 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1557 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling FFT phasing