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Anomalous substructure of lysozyme at pH 8.0
Crystallization Crystal Properties Matthews coefficient Solvent content 1.92 36.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.17 α = 90 b = 77.17 β = 90 c = 37.05 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 2.00 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 30 10159
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.84 30 9949 210 99.88 0.16786 0.16707 0.20613 RANDOM 27.367
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.34 0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.475 r_dihedral_angle_4_deg 20.368 r_dihedral_angle_3_deg 14.28 r_scangle_it 6.536 r_dihedral_angle_1_deg 6.479 r_scbond_it 4.254 r_mcangle_it 1.85 r_angle_refined_deg 1.73 r_mcbond_it 1.277 r_angle_other_deg 1.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.475 r_dihedral_angle_4_deg 20.368 r_dihedral_angle_3_deg 14.28 r_scangle_it 6.536 r_dihedral_angle_1_deg 6.479 r_scbond_it 4.254 r_mcangle_it 1.85 r_angle_refined_deg 1.73 r_mcbond_it 1.277 r_angle_other_deg 1.012 r_symmetry_vdw_refined 0.83 r_symmetry_vdw_other 0.264 r_mcbond_other 0.238 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.215 r_nbd_other 0.198 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.115 r_nbtor_other 0.088 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling FFT phasing